PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000252435
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 283aa    MW: 32107 Da    PI: 6.9629
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000252435genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.31.4e-4041411127
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.vikevdiykvePwdLpk...kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                    lppG+rF Pt+eel+++yL++k++g++   +++ + +++ v iy+++Pw+Lp+   +v++ + ++w+fF++r+ ++a+g r++r t++gyWkatg+
  MDP0000252435   4 LPPGYRFYPTEEELISFYLQNKLDGRSedlNRVLDrIVPVVYIYEFNPWELPQvsgEVSHeDPEQWFFFIPRQASEARGGRPRRLTTTGYWKATGS 99 
                    79************************9565333332578889**********5456333314559******************************* PP

            NAM  89 dkevlsk...kgelvglkktLvfykgrapkgektdWvmheyr 127
                      +v+s+    ++ +g k+t+ fy g+ap+g+kt+W+m+ey+
  MDP0000252435 100 PSTVYSSksnYNRPIGHKRTMGFYIGKAPRGKKTEWMMNEYK 141
                    ******85544555***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-433183IPR003441NAC domain
PROSITE profilePS5100546.5494183IPR003441NAC domain
PfamPF023651.4E-215141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MXDLPPGYRF YPTEEELISF YLQNKLDGRS EDLNRVLDRI VPVVYIYEFN PWELPQVSGE  60
VSHEDPEQWF FFIPRQASEA RGGRPRRLTT TGYWKATGSP STVYSSKSNY NRPIGHKRTM  120
GFYIGKAPRG KKTEWMMNEY KAIEXHADHS NHLSMAASSS NTSSSTPAPT LREEFSICRV  180
YKKSKCLIRA FDRRPPGIEI TRNPSLIIQA APAQGANHLD HGSTTSNRNP QNMGERXNLS  240
SLESSSSGNH GSQSSQPEQS GSLLMAVDNE AIWDWDELMD NWL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-31418317165NAC domain-containing protein 19
4dul_A1e-31418317165NAC domain-containing protein 19
1ut7_B1e-31418317165NO APICAL MERISTEM PROTEIN
1ut7_A1e-31418317165NO APICAL MERISTEM PROTEIN
1ut4_B1e-31418317165NO APICAL MERISTEM PROTEIN
1ut4_A1e-31418317165NO APICAL MERISTEM PROTEIN
3swp_D2e-31418320168NAC domain-containing protein 19
3swp_C2e-31418320168NAC domain-containing protein 19
3swp_B2e-31418320168NAC domain-containing protein 19
3swp_A2e-31418320168NAC domain-containing protein 19
3swm_D2e-31418320168NAC domain-containing protein 19
3swm_C2e-31418320168NAC domain-containing protein 19
3swm_B2e-31418320168NAC domain-containing protein 19
3swm_A2e-31418320168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391865.10.0PREDICTED: NAC domain-containing protein 90-like
TrEMBLM5VSR51e-122M5VSR5_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s22580.11e-95(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-53NAC domain containing protein 90